Rotation based gene set analysis


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Documentation for package ‘roastgsa’ version 1.6.0

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dragtable dragtable for html writings
expr.tcga Tumor Bladder TCGA data
fd.tcga Tumor Bladder TCGA data
hallmarks.hs Hallmarks homo sapiens gene symbol
heatmaprgsa_hm Heatmap of roastgsa results
htmlrgsa roastgsa results in html form
kegg.hs KEGG genesets homo sapiens entrez
pd.tcga Tumor Bladder TCGA data
plot.roastgsa roastgsa plot
plot.ssGSA Plot single sample Gene Set Analysis
ploteffsignaturesize roastgsa effective signature size
plotGSEA GSEA plot
plotStats General GSA plot
print.roastgsa Rotation-based Gene Set Analysis
print.ssGSA Single sample Gene Set Analysis
roastgsa Rotation-based Gene Set Analysis
sorttable sorttable for html writings
ssGSA Single sample Gene Set Analysis
varrotrand roastgsa variance rotations under gene randomization