A Bayesian Approach for Geneset Selection


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Documentation for package ‘BAGS’ version 2.44.0

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BAGS-package A Bayesian Approach for Geneset Selection (BAGS).
AnnotationMFGO List containing a collection of gene symbols with their associated GO term for the Molecular function ontology
BAGS A Bayesian Approach for Geneset Selection (BAGS).
DataGeneSets Function that filters the gene sets to work with the desired size.
Gibbs2 Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs3 Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs4 Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
Gibbs5 Function obtains the MCMC chains for the parameters of interest that will form their posterior distribution.
MCMCDataSet Function that transform the dataset into the required format for the Gibbs sampler.
ReadGMT Function that extracts the gene set definition from a .gmt file.